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PeerJ is a peer-reviewed journal published by PeerJ, covering Plant and animal studies, Genomics and Phylogenetic Studies, Coral and Marine Ecosystems Studies. Over its lifetime it has published 21,595 papers, which have received 442,192 citations.
| Publisher | PeerJ |
|---|---|
| Reference style | Author–year (APA) Author–year — (Smith, 2023) in the text Smith, A., Jones, B., & Lee, C. (2023). A representative article title. PeerJ, 12(3), 45–58.
Formats any DOI in PeerJ style. No sign-up. |
| Publishes research in | Plant and animal studies Genomics and Phylogenetic Studies Coral and Marine Ecosystems Studies Species Distribution and Climate Change Evolution and Paleontology Studies |
| ISSN | 2167-8359 |
| Citation impact (2-yr) | 3.11 |
| h-index | 167 |
| i10-index | 10,973 |
| Article processing charge | $1,395 |
| Open access | Yes — indexed in DOAJ |
| Top institutions publishing here | Chinese Academy of Sciences |
| Journal website | www.peerj.com |
| You get | A submission-ready PDF and the editable LaTeX source — ready to submit. |
Citations each year’s papers have accumulated so far — the most recent years are still building up.
BACKGROUND: VSEARCH is an open source and free of charge multithreaded 64-bit tool for processing and preparing metagenomics, genomics and population genomics nucleotide sequence data. It is designed as an alternative to the widely used USEARCH tool (Edgar, 2010) for which the source code is not publicly available, algorithm details are only rudimentarily described, and…
scikit-image is an image processing library that implements algorithms and utilities for use in research, education and industry applications. It is released under the liberal Modified BSD open source license, provides a well-documented API in the Python programming language, and is developed by an active, international team of collaborators. In this paper we highlight the…
We previously reported on MetaBAT, an automated metagenome binning software tool to reconstruct single genomes from microbial communities for subsequent analyses of uncultivated microbial species. MetaBAT has become one of the most popular binning tools largely due to its computational efficiency and ease of use, especially in binning experiments with a large number of samples…
Many microbial, fungal, or oomcyete populations violate assumptions for population genetic analysis because these populations are clonal, admixed, partially clonal, and/or sexual. Furthermore, few tools exist that are specifically designed for analyzing data from clonal populations, making analysis difficult and haphazard. We developed the R package poppr providing unique tools for analysis of data from…
Grouping large genomic fragments assembled from shotgun metagenomic sequences to deconvolute complex microbial communities, or metagenome binning, enables the study of individual organisms and their interactions. Because of the complex nature of these communities, existing metagenome binning methods often miss a large number of microbial species. In addition, most of the tools are not scalable…
