<scp>genalex</scp> 6: genetic analysis in Excel. Population genetic software for teaching and research
Rod Peakall, Peter E. Smouse · 29 Sep 2005
Abstract genalex is a user‐friendly cross‐platform package that runs within Microsoft Excel, enabling population genetic analyses of codominant, haploid and binary data. Allele frequency‐based analyses include heterozygosity, F statistics, Nei's genetic distance, population assignment, probabilities of identity and pairwise relatedness. Distance‐based calculations include amova , principal coordinates analysis (PCA), Mantel tests, multivariate and 2D spatial…
<scp>micro</scp>‐<scp>checker</scp>: software for identifying and correcting genotyping errors in microsatellite data
Cock van Oosterhout, William F. Hutchinson, D. P. M. Wills et al. · 8 Jun 2004
Abstract DNA degradation, low DNA concentrations and primer‐site mutations may result in the incorrect assignment of microsatellite genotypes, potentially biasing population genetic analyses. micro ‐ checker is windows ®‐based software that tests the genotyping of microsatellites from diploid populations. The program aids identification of genotyping errors due to nonamplified alleles (null alleles), short allele dominance…
<scp>bold</scp> : The Barcode of Life Data System (http://www.barcodinglife.org)
Sujeevan Ratnasingham, Paul D. N. Hebert · 24 Jan 2007
The Barcode of Life Data System (bold) is an informatics workbench aiding the acquisition, storage, analysis and publication of DNA barcode records. By assembling molecular, morphological and distributional data, it bridges a traditional bioinformatics chasm. bold is freely available to any researcher with interests in DNA barcoding. By providing specialized services, it aids the assembly…
<scp>distruct</scp>: a program for the graphical display of population structure
Noah A. Rosenberg · 10 Dec 2003
Abstract In analysis of multilocus genotypes from structured populations, individual coefficients of membership in subpopulations are often estimated using programs such as structure . distruct provides a general method for visualizing these estimated membership coefficients. Subpopulations are represented as colours, and individuals are depicted as bars partitioned into coloured segments that correspond to membership coefficients…
<scp>spag</scp>e<scp>d</scp>i: a versatile computer program to analyse spatial genetic structure at the individual or population levels
Olivier J. Hardy, Xavier Vekemans · 4 Oct 2002
Abstract spag e d i version 1.0 is a software primarily designed to characterize the spatial genetic structure of mapped individuals or populations using genotype data of codominant markers. It computes various statistics describing genetic relatedness or differentiation between individuals or populations by pairwise comparisons and tests their significance by appropriate numerical resampling. spag e…
