BMC (BioMed Central)

BioData Mining Template

Write in a clean editor, then format for BioData Mining in one click — DocuGuru applies the official BMC (BioMed Central) template with numbered references and exports a submission-ready PDF plus the editable LaTeX source. Free to start.

About the BioData Mining format

BioData Mining is a peer-reviewed journal published by BMC (BioMed Central), covering Bioinformatics and Genomic Networks, Gene expression and cancer classification, Genetic Associations and Epidemiology. Over its lifetime it has published 688 papers, which have received 17,785 citations.

PublisherBMC (BioMed Central)
Reference styleNumbered (Vancouver)
Numbered — [1], [2] in the text
1. Smith A, Jones B, Lee C. A representative article title. BioData Mining. 2023;12(3):45–58.

Formats any DOI in BioData Mining style. No sign-up.

Publishes research inBioinformatics and Genomic Networks Gene expression and cancer classification Genetic Associations and Epidemiology Machine Learning in Bioinformatics Genomics and Rare Diseases
ISSN1756-0381
Citation impact (2-yr)5.55
h-index58
i10-index318
Article processing charge$2,072
Open accessYes — indexed in DOAJ
Top institutions publishing hereUniversity of Pennsylvania
Journal websitebiodatamining.biomedcentral.com
You getA submission-ready PDF and the editable LaTeX source — ready to submit.

Papers published in BioData Mining per year

34
2014
44
2015
41
2016
41
2017
27
2018
22
2019
21
2020
52
2021
31
2022
35
2023
62
2024
97
2025

Citation impact of BioData Mining by publication year

829
2014
1.3K
2015
918
2016
2.3K
2017
621
2018
693
2019
598
2020
1.8K
2021
394
2022
1.5K
2023
688
2024
481
2025

Citations each year’s papers have accumulated so far — the most recent years are still building up.

Most-cited papers in BioData Mining

Ten quick tips for machine learning in computational biology

Davide Chicco · 1 Dec 2017

Machine learning has become a pivotal tool for many projects in computational biology, bioinformatics, and health informatics. Nevertheless, beginners and biomedical researchers often do not have enough experience to run a data mining project effectively, and therefore can follow incorrect practices, that may lead to common mistakes or over-optimistic results. With this review, we present…

The Matthews correlation coefficient (MCC) is more reliable than balanced accuracy, bookmaker informedness, and markedness in two-class confusion matrix evaluation

Davide Chicco, Niklas Tötsch, Giuseppe Jurman · 4 Feb 2021

Abstract Evaluating binary classifications is a pivotal task in statistics and machine learning, because it can influence decisions in multiple areas, including for example prognosis or therapies of patients in critical conditions. The scientific community has not agreed on a general-purpose statistical indicator for evaluating two-class confusion matrices (having true positives, true negatives, false positives,…

Using graph theory to analyze biological networks

Georgios A. Pavlopoulos, Maria Secrier, Charalampos Moschopoulos et al. · 28 Apr 2011

Understanding complex systems often requires a bottom-up analysis towards a systems biology approach. The need to investigate a system, not only as individual components but as a whole, emerges. This can be done by examining the elementary constituents individually and then how these are connected. The myriad components of a system and their interactions are…

Performance of genetic programming optimised Bowtie2 on genome comparison and analytic testing (GCAT) benchmarks

William B. Langdon · 7 Jan 2015

BACKGROUND: Genetic studies are increasingly based on short noisy next generation scanners. Typically complete DNA sequences are assembled by matching short NextGen sequences against reference genomes. Despite considerable algorithmic gains since the turn of the millennium, matching both single ended and paired end strings to a reference remains computationally demanding. Further tailoring Bioinformatics tools to…

The Matthews correlation coefficient (MCC) should replace the ROC AUC as the standard metric for assessing binary classification

Davide Chicco, Giuseppe Jurman · 17 Feb 2023

Binary classification is a common task for which machine learning and computational statistics are used, and the area under the receiver operating characteristic curve (ROC AUC) has become the common standard metric to evaluate binary classifications in most scientific fields. The ROC curve has true positive rate (also called sensitivity or recall) on the y…

BioData Mining template — frequently asked questions

How do I write a paper in the BioData Mining format?
In DocuGuru you write your manuscript in a normal editor — no LaTeX setup required — and select the BioData Mining template. When you export, DocuGuru compiles the paper into the official BMC (BioMed Central) format and hands you a submission-ready PDF along with the editable LaTeX source.
What reference style does BioData Mining use?
BioData Mining uses Numbered (Vancouver) references, shown as numbered [1], [2] markers in the text. DocuGuru formats every in-text citation and the reference list in this exact style automatically. A reference appears like this: 1. Smith A, Jones B, Lee C. A representative article title. BioData Mining. 2023;12(3):45–58.
Do I need to know LaTeX to submit to BioData Mining?
No. DocuGuru generates the bmcart LaTeX class and compiles the PDF for you in the background, so you get a BMC (BioMed Central)-ready BioData Mining document without writing any LaTeX. If you do want it, the LaTeX source is included in the export.
Can I import an existing draft into the BioData Mining template?
Yes. Paste or upload your current manuscript — Word, LaTeX, Markdown, or plain text — and DocuGuru reflows it into the BioData Mining format with correct headings, figures, tables, and numbered citations.
What is BioData Mining?
BMC / BioMed Central journal. It is a life sciences and medicine journal, published by BMC (BioMed Central).
Can I export a submission-ready BioData Mining PDF?
Yes — DocuGuru produces a PDF built with the official BioData Mining template (the bmcart class) that is ready to submit to BMC (BioMed Central), together with the matching LaTeX source files.
How much does the BioData Mining template cost?
You can start writing in the BioData Mining template for free. Exporting the final submission-ready BioData Mining PDF and LaTeX source is part of DocuGuru's paid plans — see the app for current pricing.
Use the BioData Mining template