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Nucleic Acids Research is a peer-reviewed journal published by Oxford University Press, covering RNA and protein synthesis mechanisms, RNA modifications and cancer, DNA and Nucleic Acid Chemistry. Over its lifetime it has published 56,221 papers, which have received 6,113,326 citations.
| Publisher | Oxford University Press |
|---|---|
| Reference style | Numbered (OUP) Numbered — [1], [2] in the text [1] A. Smith, B. Jones, and C. Lee, A representative article title, Nucleic Acids Research 12 (2023) 45–58.
Formats any DOI in the closest standard style — Nucleic Acids Research has no published style definition, so this is an approximation. No sign-up. |
| Publishes research in | RNA and protein synthesis mechanisms RNA modifications and cancer DNA and Nucleic Acid Chemistry RNA Research and Splicing DNA Repair Mechanisms |
| ISSN | 0305-1048 |
| Citation impact (2-yr) | 15.19 |
| h-index | 880 |
| i10-index | 45,049 |
| Article processing charge | $3,630 |
| Open access | Yes — indexed in DOAJ |
| Top institutions publishing here | Centre National de la Recherche Scientifique |
| Journal website | nar.oxfordjournals.org |
| You get | A submission-ready PDF and the editable LaTeX source — ready to submit. |
Citations each year’s papers have accumulated so far — the most recent years are still building up.
The BLAST programs are widely used tools for searching protein and DNA databases for sequence similarities. For protein comparisons, a variety of definitional, algorithmic and statistical refinements described here permits the execution time of the BLAST programs to be decreased substantially while enhancing their sensitivity to weak similarities. A new criterion for triggering the extension…
The sensitivity of the commonly used progressive multiple sequence alignment method has been greatly improved for the alignment of divergent protein sequences. Firstly, individual weights are assigned to each sequence in a partial alignment in order to down-weight near-duplicate sequences and up-weight the most divergent ones. Secondly, amino acid substitution matrices are varied at different…
We describe MUSCLE, a new computer program for creating multiple alignments of protein sequences. Elements of the algorithm include fast distance estimation using kmer counting, progressive alignment using a new profile function we call the log-expectation score, and refinement using tree-dependent restricted partitioning. The speed and accuracy of MUSCLE are compared with T-Coffee, MAFFT and…
limma is an R/Bioconductor software package that provides an integrated solution for analysing data from gene expression experiments. It contains rich features for handling complex experimental designs and for information borrowing to overcome the problem of small sample sizes. Over the past decade, limma has been a popular choice for gene discovery through differential expression…
The Protein Data Bank (PDB; http://www.rcsb.org/pdb/ ) is the single worldwide archive of structural data of biological macromolecules. This paper describes the goals of the PDB, the systems in place for data deposition and access, how to obtain further information, and near-term plans for the future development of the resource.
