MDPI

Proteomes Template

Write in a clean editor, then format for Proteomes in one click — DocuGuru applies the official MDPI template with numbered references and exports a submission-ready PDF plus the editable LaTeX source. Free to start.

About the Proteomes format

Proteomes is a peer-reviewed journal published by MDPI, covering Advanced Proteomics Techniques and Applications, Mass Spectrometry Techniques and Applications, Metabolomics and Mass Spectrometry Studies. Over its lifetime it has published 542 papers, which have received 9,931 citations.

PublisherMDPI
Reference styleNumbered (MDPI)
Numbered — [1], [2] in the text
1. Smith, A.; Jones, B.; Lee, C. A Representative Article Title. Proteomes 2023, 12, 45–58.

Formats any DOI in Proteomes style. No sign-up.

Publishes research inAdvanced Proteomics Techniques and Applications Mass Spectrometry Techniques and Applications Metabolomics and Mass Spectrometry Studies Extracellular vesicles in disease Plant Stress Responses and Tolerance
ISSN2227-7382
Citation impact (2-yr)3.94
h-index47
i10-index274
Article processing charge$1,732
Open accessYes — indexed in DOAJ
Top institutions publishing hereCentre National de la Recherche Scientifique
Journal websitewww.mdpi.com
You getA submission-ready PDF and the editable LaTeX source — ready to submit.

Papers published in Proteomes per year

29
2014
25
2015
42
2016
36
2017
52
2018
35
2019
37
2020
50
2021
38
2022
41
2023
37
2024
66
2025

Citation impact of Proteomes by publication year

539
2014
435
2015
1.3K
2016
988
2017
1.3K
2018
899
2019
1K
2020
1.1K
2021
728
2022
514
2023
341
2024
163
2025

Citations each year’s papers have accumulated so far — the most recent years are still building up.

Most-cited papers in Proteomes

A Critical Review of Bottom-Up Proteomics: The Good, the Bad, and the Future of This Field

Emmalyn J. Dupree, Madhuri Jayathirtha, Hannah Yorkey et al. · 6 Jul 2020

Proteomics is the field of study that includes the analysis of proteins, from either a basic science prospective or a clinical one. Proteins can be investigated for their abundance, variety of proteoforms due to post-translational modifications (PTMs), and their stable or transient protein-protein interactions. This can be especially beneficial in the clinical setting when studying…

Proteome Discoverer—A Community Enhanced Data Processing Suite for Protein Informatics

Benjamin C. Orsburn · 23 Mar 2021

Proteomics researchers today face an interesting challenge: how to choose among the dozens of data processing and analysis pipelines available for converting tandem mass spectrometry files to protein identifications. Due to the dominance of Orbitrap technology in proteomics in recent history, many researchers have defaulted to the vendor software Proteome Discoverer. Over the fourteen years…

“Omics”-Informed Drug and Biomarker Discovery: Opportunities, Challenges and Future Perspectives

Holly Matthews, James Hanison, Niroshini Nirmalan · 12 Sep 2016

The pharmaceutical industry faces unsustainable program failure despite significant increases in investment. Dwindling discovery pipelines, rapidly expanding R&D budgets and increasing regulatory control, predict significant gaps in the future drug markets. The cumulative duration of discovery from concept to commercialisation is unacceptably lengthy, and adds to the deepening crisis. Existing animal models predicting clinical translations…

Transcription Factor Functional Protein-Protein Interactions in Plant Defense Responses

Murilo Calil Alves, Silvana Pinheiro Dadalto, Amanda Gonçalves et al. · 4 Mar 2014

Responses to biotic stress in plants lead to dramatic reprogramming of gene expression, favoring stress responses at the expense of normal cellular functions. Transcription factors are master regulators of gene expression at the transcriptional level, and controlling the activity of these factors alters the transcriptome of the plant, leading to metabolic and phenotypic changes in…

Milk-Derived Extracellular Vesicles in Inter-Organism, Cross-Species Communication and Drug Delivery

Rahul Sanwlani, Pamali Fonseka, Sai V. Chitti et al. · 13 May 2020

Milk is considered as more than a source of nutrition for infants and is a vector involved in the transfer of bioactive compounds and cells. Milk contains abundant quantities of extracellular vesicles (EVs) that may originate from multiple cellular sources. These nanosized vesicles have been well characterized and are known to carry a diverse cargo…

Proteomes template — frequently asked questions

How do I write a paper in the Proteomes format?
In DocuGuru you write your manuscript in a normal editor — no LaTeX setup required — and select the Proteomes template. When you export, DocuGuru compiles the paper into the official MDPI format and hands you a submission-ready PDF along with the editable LaTeX source.
What reference style does Proteomes use?
Proteomes uses Numbered (MDPI) references, shown as numbered [1], [2] markers in the text. DocuGuru formats every in-text citation and the reference list in this exact style automatically. A reference appears like this: 1. Smith, A.; Jones, B.; Lee, C. A Representative Article Title. Proteomes 2023, 12, 45–58.
Do I need to know LaTeX to submit to Proteomes?
No. DocuGuru generates the mdpi LaTeX class and compiles the PDF for you in the background, so you get a MDPI-ready Proteomes document without writing any LaTeX. If you do want it, the LaTeX source is included in the export.
Can I import an existing draft into the Proteomes template?
Yes. Paste or upload your current manuscript — Word, LaTeX, Markdown, or plain text — and DocuGuru reflows it into the Proteomes format with correct headings, figures, tables, and numbered citations.
What is Proteomes?
Proteomes - MDPI Journal. It is a multidisciplinary journal, published by MDPI.
Can I export a submission-ready Proteomes PDF?
Yes — DocuGuru produces a PDF built with the official Proteomes template (the mdpi class) that is ready to submit to MDPI, together with the matching LaTeX source files.
How much does the Proteomes template cost?
You can start writing in the Proteomes template for free. Exporting the final submission-ready Proteomes PDF and LaTeX source is part of DocuGuru's paid plans — see the app for current pricing.
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